Serotypes, GPSC-clusters, and MLST types

Published

November 23, 2022

Outline

The following plots presents an analysis of GPSC clusters, serotypes and MLST for the data from Norway, Maela, Massachusetts, South Africa and USA. The categories were estimated by using the pathogenwatch.

GPSC clusters

18637391911216Not assigned8315104432234904;9273631549501411157768246124472438673548555759782;120811315629751622643050100150200
Norway historicStrainCounts
3191271636116516244483904;912435327546497222427Not assigned387221015291139188914146244713156576991191524326299394455055050100150200
Norway routineStrainCounts
12028424725904;910663745633069738760825149241222310611816110128130107127407148166104134154151167138173Not assigned17418018718816532430100200300
MaelaStrainCounts
47359361904;9191364111659712891524382717518233539456013511913216495714325075811012314029397156222373164647480255075100
massachusettsStrainCounts
17141041512123718133904;977826794856542533709052511661130168326822;857;8821591781131249793205270476111411613720024050100150
SouthAfricaStrainCounts
1415192736183971650321238233155997Not assigned3611924904;911131321359864101242989111355749761417515645140323467582050100
USAStrainCounts

Serotypes

1419F0323F09V19A22F07F046E(6B)33F0109N06B18C23A06A15A16F35B35F06C0811A12F0515C2010Aserogroup 2415B23B13831alternative_aliB_NT17F2123B07C18B34Swiss_NT10B11E12B25F28A2932F450100200
Norway historicSerotypeCounts
0322F0809N23A10A35F23B10415A19A35B19F23B15Cserogroup 2406C11A15B33F16F2017F07F3811B12F11E07C23F10B06B14213106A18C10F133435D0109V11A/11B/11C/11D/11E/11F15F18B33B376E(6B)Swiss_NT050100150
Norway routineSerotypeCounts
19Funtypable23F6E(6B)14Swiss_NT06A3419A06C15B15A11A15C35F33B1310A0310B23A19B35B2116F0409V18C28F10F17F32F22A23B109L07F2022F33C0507B384046serogroup 240835A37316E(6A)0100200300400
MaelaSerotypeCounts
47359361904;9191364111659712891524382717518233539456013511913216495714325075811012314029397156222373164647480255075100
massachusettsStrainCounts
1419F19A23F06A6E(6B)010412F080509V15B16F0315A35B15C18C09N17F06B23A07F1306C07C10A33D33F3411A2122F23B23B119B2025F29313810B11E18A28A28F33A/33F6E(6A)possible 06D050100150200
SouthAfricaSerotypeCounts
19A1407F22F19F0433F18C09V0323F12F06A15C6E(6B)0106C35B3815B10A09N16F11A23A15A0823B06B23B13135F17F11E18B07C34202135D0513serogroup 246E(6A)09A/09V18A33A37Swiss_NT0100200300
USASerotypeCounts

MLST

912418043316215632010019163661992051772328117911761377218242623093653143301132732763064902894981291523024731023504149424395741030126227133392440050100150
Norway historicSTCounts
43353180661262162624213778011635439446237283463438452100199134915511792353923038112054058161981009177350039330175059715161152687171379191652485189941507917142068269004080120
Norway routineSTCounts
44148023154209413344131439236634395991701413644226692496544844202108373581512749361722624440343898703384408411350925103439644185227901910230512098210534445158736710439054776707440649660100200
MaelaSTCounts
199558626346049843313904391379180338191320363763936951241839187623644854781613815642518473280424736596671621925434385686549710013371461913191419152713924520255075
massachusettsSTCounts
20622301094172627921720593472652271536356591859894201492541070521221228529092421612144736186872416612124234544586277708450735653117665647241410961561807050773821853533544392832683370255075100125
SouthAfricaSTCounts
1911993204331246951318015639322027052275586210011381145116233843920537666721863816126966138899125732804601339139014802513060374986549097137339247363290255075100125
USASTCounts